1. Li J#, Du P#, Yang L#, Zhang J#, Song C#, Chen D#, Song Y, Ding N, Hua M, Han K, Song R, Xie W, Chen Z, Wang X, Liu J, Xu Y, Gao G, Wang Q, Pu L, Di L, Li J, Yue J, Han J, Zhao X, Yan Y, Yu F, Wu AR, Zhang F*, Gao YQ*, Huang Y*, Wang J*, Zeng H*, Chen C*.Two-step fitness selection for intra-host variations in SARS-CoV-2.Cell Reports.2022.38(2).110205.SCI |
2. Yue J#, Hua M#, Chen N, Li J, Liu X, Duan A, Wang H, Du P, Rong C, Yang D, Chen C*.Role of the fsr Quorum-Sensing System in Enterococcus faecalis Bloodstream Infection.Applied and Environmental Microbiology.2022.88(23).e0155122.SCI |
3. Hua M#, Duan A#, Li Q#, Yue J, Liu X, Yuan L, Liu J, Chen C*.Alteration of microbiota and immune response of mice gavaged with Klebsiella oxytoca.Microbes and Infection.2022.24(6-7).104977.SCI |
4. Hua M#, Dai D#, Du P, Chen N, Duan A, Yue J, Jia H, Rong C, Li A, Zeng H*, Chen C*.A chromosome-encoded T4SS independently contributes to horizontal gene transfer in Enterococcus faecalis.Cell Reports.2022.41(6).111609.SCI |
5. Li NN#, Li W#, Feng JX#, Zhang WW, Zhang R, Du SH, Liu SY, Xue GH, Yan C, Cui JH, Zhao HQ, Feng YL, Gan L, Zhang Q, Chen C*, Liu D*, Yuan J*.High alcohol-producing Klebsiella pneumoniae causes fatty liver disease through 2,3-butanediol fermentation pathway in vivo.Gut Microbes.2021.13(1).1979883.SCI |
6. Zhang J#, Ding N#, Ren L#, Song R#, Chen D#, Zhao X, Chen B, Han J, Li J, Song Y, Di L, Han K, Yu F, Xie R, Chen Z, Xie W, Liu J, Cen S, Bi Y, Wu AR*, Zhang F*, Chen C*, Zeng H*.COVID-19 reinfection in the presence of neutralizing antibodies.National Science Review.2021.8(4).nwab006.SCI |
7. Zhang J#, Ding N#, Song Y#, Song R#, Pan Y#, Wang L, Yan S, Wang Q, Ma S, Wei L, Yu F, Lu L*, Zhang F*, Chen C*, Zeng H*.Phylogenomic tracing of asymptomatic transmission in a COVID-19 outbreak.Innovation.2021.2(2).100099.SCI |
8. Chen C#, Gao G#, Xu Y#, Pu L#, Wang Q#, Wang L#, Wang W, Song Y, Chen M, Wang L, Yu F, Yang S, Tang Y, Zhao L, Wang H, Wang Y, Zeng H*, Zhang F*.Sars-Cov-2–Positive Sputum and Feces after Conversion of Pharyngeal Samples in Patients with Covid-19.Annals of Internal Medicine.2020.172(12).832-834.SCI |
9. Du P#, Ding N#, Li J#, Zhang F#, Wang Q#, Chen Z#, Song C, Han K, Xie W, Liu J, Wang L, Wei L, Ma S, Hua M, Yu F, Wang L, Wang W, An K, Chen J, Liu H, Gao G, Wang S, Huang Y, Wu AR, Wang J*, Liu D*, Zeng H*, Chen C*.Genomic surveillance of COVID-19 cases in Beijing.Nature Communications.2020.11(1).5503.SCI |
10. Chen C#, Li J#, Di L#, Jing Q#, Du P#, Song C, Li J, Li Q, Cao Y, Xie XS, Wu AR*, Zeng H*, Huang Y*, Wang J*.MINERVA: A Facile Strategy for SARS-CoV-2 Whole- Genome Deep Sequencing of Clinical Samples.Molecular Cell.2020.80(6).1123-1134.SCI |
11. Du P#, Song C#, Li R#, Song Y#, Li J, Ding N, Zhang J, Song R, Han J, Gao G, Yue J, Duan A, Huang Y, An J, Wang J*, Zhang F*, Chen C*, Zeng H*.Specific Redistribution of Severe Acute Respiratory Syndrome Coronavirus 2 Variants in the Respiratory System and Intestinal Tract.Clinical Infectious Diseases.2020.73(9).e2814-e2817.SCI |
12. Li J#, Du P#, Ye AY, Zhang Y, Song C, Zeng H*, Chen C*.GPA: A Microbial Genetic Polymorphisms Assignments Tool in Metagenomic Analysis by Bayesian Estimation. Genomics Proteomics Bioinformatics.Genomics Proteomics Bioinformatics.2019.17(1).106-117.SCI |
13. Yuan J#*, Chen C#, Cui J#, Lu J#, Yan C#, Wei X, Zhao X, Li N, Li S, Xue G, Cheng W, Li B, Li H, Lin W, Tian C, Zhao J, Han J, An D, Zhang Q, Wei H, Zheng M, Ma X, Li W, Chen X, Zhang Z, Zeng H, Ying S, Wu J, Yang R*, Liu D*.Fatty Liver Disease Caused by High-Alcohol-Producing Klebsiella pneumoniae. Cell Metabolism.2019.30(4).675-688.SCI |
14. C Chen#*, D Jiang#, M Ni#, J Li#, Z Chen, J Liu, H Ye, G Wong, W Li, Y Zhang, B Wang, Y Bi, D Chen, P Zhang, X Zhao, Y Kong, W Shi, P Du, G Xiao, J Ma, G F. Gao, J Cui, F Zhang, W Liu, X Bo, A Li*, H Zeng*, D Liu*.Phylogenomic analysis unravels evolution of yellow fever virus within hosts.PLoS Neglected Tropical Diseases.2018.12(9).e0006738.SCI |
15. Du P, Zhang Y, Chen C*.Emergence of carbapenem-resistant hypervirulent Klebsiella pneumoniae.The Lancet Infectious Diseases.2017.18(1).23-24.SCI |
16. Zhang W#, Cheng Y#, Du P,# Zhang Y, Jia H, Li X, Wang J, Han N, Qiang Y, Chen C*, Lu J*.Genomic study of the Type IVC secretion system in Clostridium difficile: Understanding C. difficile evolution via horizontal gene transfer.Genome.2017.1(1).8-16.SCI |
17. Ni M#, Chen C#, Qian J#, Xiao HX, Shi WF, Luo Y, Wang HY, Li Z, Wu J, Xu PS, Chen SH, Wong G, Bi Y, Xia ZP, Li W, Lu HJ, Ma J, Tong YG, Zeng H, Wang SQ*, Gao GF*, Bo XC*, Liu D*.Intra-host dynamics of Ebola virus during 2014.Nature Microbiology.2016.1.16151.SCI |
18. Jia H#, Du P#, Yang H#, Zhang Y#, Wang J, Zhang W, Han G, Han N, Yao Z, Wang H, Zhang J, Wang Z, Ding Q, Qiang Y, Barbut F, Gao GF, Cao Y*, Cheng Y*, Chen C*.Nosocomial transmission of Clostridium difficile ribotype 027 in a Chinese hospital, 2012-2014, traced by whole genome sequencing.BMC Genomics.2016.17(1) .405.SCI |
19. Hao Q#, Du P#, Zhang W, Hou X, Zhang L, Zhang Y, Liu H, Liu W, Chen C*, Wan K.Genomic Characteristics of Chinese Borrelia burgdorferi Isolates.Plos One.2016.11(4).e0153149.SCI |
20. Cao B#, Zhang Y#, Bian F#, Cheng Y#, Wang J, Jia H, Zhang W, Lu J, Chen C*, Du P* .Detection of Clostridium difficile toxin genes by PCR: sequence variation may cause false-negative results.Journal of Medical Microbiology.2015.64(2).195-197.SCI |
21. Wang H#, Du P#, Li J#, Zhang Y, Zhang W, Han N, Woo PC, and Chen C*.Comparative analysis of microbiome between accurately identified 16S rDNA and quantified bacteria in simulated samples.J Med Microbiol.2014.63(Pt 3).433-440.SCI |
22. Du P#, Cao B#, Wang J#, Li W, Jia H, Zhang W, Lu J, Li Z, Yu H, Chen C*, and Cheng Y*.Sequence Variation in tcdA and tcdB of Clostridium difficile: ST37 with Truncated tcdA Is a Potential Epidemic Strain in China.J Clin Microbiol.2014.52(9).3264-3270.SCI |
23. Zhang W#, Du P#, Zheng H, Yu W, Wan L, Chen C*.Whole-genome sequence comparison as a method for improving bacterial species definition.J Gen Appl Microbiol.2014.60(2).75-78.SCI |
24. Chen C#, Lu S#, Du P#, Wang H, Yu W, Song H, and Xu J*.Silent geographical spread of the H7N9 virus by online knowledge analysis of the live bird trade with a distributed focused crawler.Emerg Microbes Infect.2013. 2(12).e89.SCI |
25. Jiang H#, Du P#, Zhang W, Wang H, Zhao H, Piao D, Tian G, Chen C*, and Cui B*.Comparative genomic analysis of Brucella melitensis vaccine strain M5 provides insights into virulence attenuation.PloS One.2013.8(8).e70852.SCI |
26. Jin D#, Chen C#, Li L#, Lu S#, Li Z#, Zhou Z, Jing H, Xu Y, Du P, Wang H, Xiong Y, Zheng H, Bai X, Sun H, Wang L, Ye C, Gottschalk M, and Xu J*.Dynamics of fecal microbial communities in children with diarrhea of unknown etiology and genomic analysis of associated Streptococcus lutetiensis.BMC Microbiol.2013.13(1).141.SCI |
27. Chen C#, Zhang W#, Zheng H#, Lan R#, Wang H, Du P, Bai X, Ji S, Meng Q, Jin D, Liu K, Jing H, Ye C, Gao GF, Wang L, Gottschalk M, and Xu J*.Minimum core genome sequence typing of bacterial pathogens: a unified approach for clinical and public health microbiology.J Clin Microbiol.2013. 51(8).2582-2591.SCI |
28. Liu H#, Jiang Y#, Dou X#, Wang H#, Zhao X, Zhang W, Wan L, Zhang Z, Chen C*, and Wan K*.pstS1 polymorphisms of Mycobacterium tuberculosis strains may reflect ongoing immune evasion.Tuberculosis.2013.93(5).475-481.SCI |
29. Yan Q#, Zhang J#, Chen C#, Zhou H, Du P, Cui Z, Cen R, Liu L, Li W, Cao B, Lu J*, and Cheng Y*.Multilocus sequence typing (MLST) analysis of 104 Clostridium difficile strains isolated from China.Epidemiol Infect.2013.141(1).195-199.SCI |
30. Zhang W#, Zhang Y#, Zheng H#, Pan Y#, Liu H, Du P, Wan L, Liu J, Zhu B*, Zhao G*, Chen C*, and Wan K*.Genome sequencing and analysis of BCG vaccine strains.PloS One.2013.8(8).e71243.SCI |
31. Du P#, Zhang W#, Wang H, and Chen C*.Comparative genomic analysis of Escherichia coli O104:H4 stx2 prophage reveals a potential new method to identify virulence factors.Genome.2012.55(9).697-700.SCI |
32. Zhang W#, Rong C#, Chen C*, and Gao GF*.Type-IVC secretion system: a novel subclass of type IV secretion system (T4SS) common existing in gram-positive genus Streptococcus.PloS One.2012.7(10).e46390.SCI |